From 7bcd4a6cf1d9b3c5844492e1ee45e440179195db Mon Sep 17 00:00:00 2001
From: Pascal Serrarens <pascal@passer.life>
Date: Mon, 9 Feb 2026 09:22:31 +0100
Subject: [PATCH] ant and mouth share the same brain

---
 Cluster.cs                 | 8 ++++++--
 Editor/ClusterInspector.cs | 2 +-
 Neuron.cs                  | 4 ++--
 Nucleus.cs                 | 2 +-
 NucleusArray.cs            | 4 ++--
 5 files changed, 12 insertions(+), 8 deletions(-)

diff --git a/Cluster.cs b/Cluster.cs
index e9eeb18..e94417b 100644
--- a/Cluster.cs
+++ b/Cluster.cs
@@ -86,8 +86,12 @@ public class Cluster : Nucleus {
                 int arrayIx = 0;
                 foreach (Nucleus prefabArrayNucleus in prefabNucleus.array.nuclei) {
                     int arrayNucleusIx = GetNucleusIndex(prefabNuclei, prefabArrayNucleus);
+                    if (arrayNucleusIx >= 0) {
                     Nucleus clonedArrayNucleus = clonedNuclei[arrayNucleusIx];
                     clonedArray.nuclei[arrayIx] = clonedArrayNucleus;
+                    } else {
+                        Debug.LogError($" Could not find prefab nuclues {prefabNucleus.name} in the clones");
+                    }
                     arrayIx++;
                 }
                 clonedNucleus.array = clonedArray;
@@ -138,9 +142,9 @@ public class Cluster : Nucleus {
         return sortedOrder;
     }
 
-    public override Nucleus Clone() {
+    public override Nucleus Clone(ClusterPrefab prefab) {
         //Neuron clone = new(this.cluster, this.name) {
-        Neuron clone = new(this.parent, this.name) {
+        Neuron clone = new(prefab, this.name) {
             array = this.array,
         };
 
diff --git a/Editor/ClusterInspector.cs b/Editor/ClusterInspector.cs
index e1928f9..1fa78ee 100644
--- a/Editor/ClusterInspector.cs
+++ b/Editor/ClusterInspector.cs
@@ -550,7 +550,7 @@ public class ClusterInspector : Editor {
                     EditorGUILayout.BeginHorizontal();
                     EditorGUILayout.IntField("Array size", neuroid.array.nuclei.Count());
                     if (GUILayout.Button("Add"))
-                        neuroid.array.AddNucleus();
+                        neuroid.array.AddNucleus(this.cluster);
                     if (GUILayout.Button("Del"))
                         neuroid.array.RemoveNucleus();
                     EditorGUILayout.EndHorizontal();
diff --git a/Neuron.cs b/Neuron.cs
index aa62c72..4b86845 100644
--- a/Neuron.cs
+++ b/Neuron.cs
@@ -139,8 +139,8 @@ public class Neuron : Nucleus {
         return clone;
     }
 
-    public override Nucleus Clone() {
-        Neuron clone = new(this.cluster, this.name) {
+    public override Nucleus Clone(ClusterPrefab prefab) {
+        Neuron clone = new(prefab, this.name) {
         //Neuron clone = new(this.parent, this.name) {
             array = this.array,
             curve = this.curve,
diff --git a/Nucleus.cs b/Nucleus.cs
index 247ffad..25bebb1 100644
--- a/Nucleus.cs
+++ b/Nucleus.cs
@@ -34,7 +34,7 @@ public abstract class Nucleus {
     public int stale = 1000;
 
     public abstract Nucleus ShallowCloneTo(Cluster parent);
-    public abstract Nucleus Clone();
+    public abstract Nucleus Clone(ClusterPrefab prefab);
 
     #region Synapses
 
diff --git a/NucleusArray.cs b/NucleusArray.cs
index 543718d..368aac3 100644
--- a/NucleusArray.cs
+++ b/NucleusArray.cs
@@ -28,7 +28,7 @@ public class NucleusArray {
     }
 
 
-    public void AddNucleus() {
+    public void AddNucleus(ClusterPrefab prefab) {
         if (this._nuclei.Length == 0) {
             Debug.LogError("Empty perceptoid array, cannot add");
             return;
@@ -39,7 +39,7 @@ public class NucleusArray {
         for (int i = 0; i < this._nuclei.Length; i++)
             newArray[i] = this._nuclei[i];
         if (this._nuclei[0] is Nucleus nucleus)
-            newArray[newLength - 1] = nucleus.Clone();
+            newArray[newLength - 1] = nucleus.Clone(prefab);
 
         this._nuclei = newArray;
     }