From 8a414816e51ab5d5aed3c220cfb51e0a342ad2e9 Mon Sep 17 00:00:00 2001
From: Pascal Serrarens <pascal@passer.life>
Date: Fri, 30 Jan 2026 11:05:00 +0100
Subject: [PATCH] subcluster seems to work

---
 Cluster.cs  | 21 +++++++++++++++------
 INucleus.cs |  2 +-
 Neuron.cs   | 10 ++++------
 Receptor.cs |  6 +++---
 4 files changed, 23 insertions(+), 16 deletions(-)

diff --git a/Cluster.cs b/Cluster.cs
index 6bc11aa..9d92c1c 100644
--- a/Cluster.cs
+++ b/Cluster.cs
@@ -110,12 +110,12 @@ public class Cluster : INucleus {
         // Now clone the connections
         for (int nucleusIx = 0; nucleusIx < nucleiArray.Length; nucleusIx++) {
             IReceptor receptor = nucleiArray[nucleusIx];
-            IReceptor clonedReceptor = clonedNuclei[nucleusIx];
-            if (clonedReceptor == null)
+            IReceptor clonedSender = clonedNuclei[nucleusIx];
+            if (clonedSender == null)
                 continue;
 
             // Copy the receivers, which will also create the synapses
-            foreach (INucleus receiver in nucleiArray[nucleusIx].receivers) {
+            foreach (INucleus receiver in receptor.receivers) {
                 int ix = GetNucleusIndex(nucleiArray, receiver);
                 if (ix < 0)
                     continue;
@@ -123,7 +123,16 @@ public class Cluster : INucleus {
                 if (clonedNuclei[ix] is not INucleus clonedReceiver)
                     continue;
 
-                clonedReceptor.AddReceiver(clonedReceiver);
+                // Find the synapse for the weight
+                float weight = 1;
+                foreach (Synapse synapse in receiver.synapses) {
+                    if (synapse.nucleus == receptor) {
+                        weight = synapse.weight;
+                        break;
+                    }
+                }
+
+                clonedSender.AddReceiver(clonedReceiver, weight);
             }
         }
     }
@@ -287,9 +296,9 @@ public class Cluster : INucleus {
         set { _receivers = value; }
     }
 
-    public virtual void AddReceiver(INucleus receivingNucleus) {
+    public virtual void AddReceiver(INucleus receivingNucleus, float weight = 1) {
         this._receivers.Add(receivingNucleus);
-        receivingNucleus.AddSynapse(this);
+        receivingNucleus.AddSynapse(this, weight);
     }
 
     public void RemoveReceiver(INucleus receiverNucleus) {
diff --git a/INucleus.cs b/INucleus.cs
index cd4ba50..13590a1 100644
--- a/INucleus.cs
+++ b/INucleus.cs
@@ -33,7 +33,7 @@ public interface IReceptor {
     // Receivers
     public List<INucleus> receivers { get; set; }
 
-    public void AddReceiver(INucleus receiver);
+    public void AddReceiver(INucleus receiver, float weight = 1);
     public void RemoveReceiver(INucleus receiverNucleus);
 
     #endregion static
diff --git a/Neuron.cs b/Neuron.cs
index 9c153ef..db67206 100644
--- a/Neuron.cs
+++ b/Neuron.cs
@@ -181,10 +181,6 @@ public class Neuron : INucleus {
         //     Debug.LogError("No neuroid network");
     }
 
-    // public Neuron(string name) {
-    //     this._name = name;
-    // }
-
     // this clone the nucleus without the synapses and receivers
     public virtual IReceptor ShallowCloneTo(Cluster newParent) {
         Neuron clone = new(newParent, this.name) {
@@ -246,9 +242,9 @@ public class Neuron : INucleus {
         return clone;
     }
 
-    public virtual void AddReceiver(INucleus receivingNucleus) {
+    public virtual void AddReceiver(INucleus receivingNucleus, float weight = 1) {
         this._receivers.Add(receivingNucleus);
-        receivingNucleus.AddSynapse(this);
+        receivingNucleus.AddSynapse(this, weight);
     }
 
     public void RemoveReceiver(INucleus receiverNucleus) {
@@ -294,6 +290,7 @@ public class Neuron : INucleus {
         float3 sum = inputValue;//new(0, 0, 0);
         int n = 0;
 
+        Debug.Log($"{this.parent.name}.{this.name}: {inputValue}");
         //Applying the weight factgors
         foreach (Synapse synapse in this.synapses) {
             if (synapse.nucleus == this) {
@@ -301,6 +298,7 @@ public class Neuron : INucleus {
                 synapse.weight = deltaTime;
             }
             sum += synapse.weight * synapse.nucleus.outputValue;
+            Debug.Log($"   {synapse.weight} * {synapse.nucleus.outputValue}");
             // Perhaps synapses should be removed when the output value goes to 0....
             if (lengthsq(synapse.nucleus.outputValue) != 0)
                 n++;
diff --git a/Receptor.cs b/Receptor.cs
index 0baec36..d7321bc 100644
--- a/Receptor.cs
+++ b/Receptor.cs
@@ -102,9 +102,9 @@ public class Receptor : IReceptor {
 
     protected int[] thingIds; // every receiver can handle a thing with this id
 
-    public virtual void AddReceiver(INucleus receivingNucleus) {
+    public virtual void AddReceiver(INucleus receivingNucleus, float weight = 1) {
         this._receivers.Add(receivingNucleus);
-        receivingNucleus.AddSynapse(this);
+        receivingNucleus.AddSynapse(this, weight);
     }
 
     public void RemoveReceiver(INucleus receiverNucleus) {
@@ -142,7 +142,7 @@ public class Receptor : IReceptor {
         this.localPosition = newLocalPositionVector;
         if (this._receivers == null)
             return;
-            
+
         thingIds ??= new int[this._receivers.Count];
 
         int receiverIx = 0;