using System;
using System.Collections.Generic;
using UnityEngine;
using Unity.Mathematics;
using static Unity.Mathematics.math;

[Serializable]
public class ClusterReceptor : Cluster, IReceptor {
    public ClusterReceptor(ClusterPrefab prefab, Cluster parent, string name) : base(prefab, parent) {
        this.name = name;
        this.array = new NucleusArray(this);
        if (this.name.IndexOf(":") < 0)
            this.name += ": 0";

    }
    public ClusterReceptor(ClusterPrefab prefab, ClusterPrefab parent, string name) : base(prefab, parent) {
        this.name = name;
        this.array = new NucleusArray(this);
    }

    public string GetName() {
        return this.name;
    }

    public override Nucleus ShallowCloneTo(Cluster parent) {
        ClusterReceptor clone = new(this.prefab, parent, this.name) {
            clusterPrefab = this.clusterPrefab,
            //array = this.array
        };
        //CloneFields(clone);
        // This cloned the prefab with the clusternuclei,
        // but did not clone the receivers outside the cluster
        RestoreExternalReceivers(clone, this.clusterPrefab, parent);

        return clone;
    }

    public override Nucleus Clone(ClusterPrefab parent) {
        ClusterReceptor clone = new(prefab, parent, this.name) {
            array = this._array
        };

        //CloneFields(clone);
        foreach (Synapse synapse in this.synapses) {
            Synapse clonedSynapse = clone.AddSynapse(synapse.nucleus);
            clonedSynapse.weight = synapse.weight;
        }

        // foreach (Nucleus receiver in this.receivers) {
        //     clone.AddReceiver(receiver);
        // }

        this._outputs = null; // Make sure the output are regenerated
        foreach (Neuron output in this.outputs) {
            int ix = GetNucleusIndex(this.clusterNuclei, output);
            if (ix < 0 || clone.clusterNuclei[ix] is not Neuron clonedOutput)
                continue;

            foreach (Nucleus receiver in output.receivers)
                clonedOutput.AddReceiver(receiver);
        }
        return clone;
    }

    public override List<Nucleus> CollectReceivers() {
        List<Nucleus> receivers = new();
        foreach (Nucleus element in this.nucleiArray) {
            if (element is not Cluster clusterElement)
                continue;

            foreach (Nucleus outputNucleus in clusterElement.clusterNuclei) {
                if (outputNucleus is not Neuron output)
                    continue;
                    
                // this should be clusterElement.outputs,
                // but outputs is not updated when correctly and may contain old data...
                foreach (Nucleus receiver in output.receivers) {
                    // Only add receivers outside clusterElement cluster
                    if (receiver.clusterPrefab != clusterElement.prefab &&
                        receivers.Contains(receiver) == false)
                        receivers.Add(receiver);
                }
            }
        }
        return receivers;
    }

    [SerializeReference]
    private NucleusArray _array;
    public NucleusArray array {
        //get { return _array; }
        set { _array = value; }
    }

    //[SerializeReference]
    //private Nucleus[] _nucleusArray;
    public Nucleus[] nucleiArray {
        get { return _array.nuclei; }
        set { _array.nuclei = value; }
    }

    public void AddReceptorElement(ClusterPrefab prefab) {
        IReceptorHelpers.AddReceptorElement(this, prefab);
    }

    public void RemoveReceptorElement() {
        IReceptorHelpers.RemoveReceptorElement(this);
    }

    public void AddArrayReceiver(Nucleus receiverToAdd, float weight = 1) {
        IReceptorHelpers.AddArrayReceiver(this, receiverToAdd, weight);
    }

    public override void UpdateStateIsolated() {
        float3 sum = this.bias;

        foreach (Nucleus nucleus in this.sortedNuclei)
            nucleus.UpdateStateIsolated();

        this.outputValue = this.defaultOutput.outputValue;
        this.stale = 0;

        UpdateNuclei();
    }

    public override void UpdateNuclei() {
        this.stale++;
        if (this.stale > staleValueForSleep && lengthsq(this.bias) > 0) {
            this.bias = new float3(0, 0, 0);
            this.parent.UpdateFromNucleus(this);
        }

        foreach (Nucleus nucleus in this.clusterNuclei)
            nucleus.UpdateNuclei();
    }

    public override void ProcessStimulus(Vector3 inputValue, int thingId = 0, string thingName = null) {
        this._array ??= new NucleusArray(this.parent);
        this._array.ProcessStimulus(thingId, inputValue, thingName);
    }
}